UbiBrowser Database (indra.sources.ubibrowser
)
This module implements an API and processor for UbiBrowser, a resource for ubiquitin ligase-sbstrate and deubiquitinase-substrate interactions. See http://ubibrowser.ncpsb.org.cn/ for more information.
UbiBrowser API (indra.sources.ubibrowser.api
)
- indra.sources.ubibrowser.api.process_df(e3_df, dub_df)[source]
Process data frames containing UbiBrowser data.
- Parameters
e3_df (
DataFrame
) – A data frame containing UbiBrowser E3 data.dub_df (
DataFrame
) – A data frame containing UbiBrowser DUB data.
- Return type
- Returns
An UbiBrowserProcessor object with INDRA Statements extracted in its statements attribute.
- indra.sources.ubibrowser.api.process_file(e3_path, dub_path)[source]
Process UbiBrowser data from files.
- Parameters
- Return type
- Returns
An UbiBrowserProcessor object with INDRA Statements extracted in its statements attribute.