Assemblers of model output (indra.assemblers
)¶
- Executable PySB models (
indra.assemblers.pysb.assembler
) - Cytoscape networks (
indra.assemblers.cx.assembler
) - Natural language (
indra.assemblers.english.assembler
) - Node-edge graphs (
indra.assemblers.graph.assembler
) - SIF / Boolean networks (
indra.assemblers.sif.assembler
) - MITRE “index cards” (
indra.assemblers.index_card.assembler
) - SBGN output (
indra.assemblers.sbgn.assembler
) - Cytoscape JS networks (
indra.assemblers.cyjs.assembler
) - Tabular output (
indra.assemblers.tsv.assembler
) - HTML browsing and curation (
indra.assemblers.html.assembler
) - BMI wrapper for PySB-assembled models (
indra.assemblers.pysb.bmi_wrapper
) - PyBEL graphs (
indra.assemblers.pybel.assembler
) - Kami models (
indra.assemblers.kami.assembler
) - IndraNet Graphs (
indra.assemblers.indranet
)