Database clients (:py:mod:`indra.databases`)
============================================

.. automodule:: indra.databases
    :members:

identifiers.org mappings and URLs (:py:mod:`indra.databases.identifiers`)
-------------------------------------------------------------------------

.. automodule:: indra.databases.identifiers
    :members:

Bioregistry mappings and URLs (:py:mod:`indra.databases.bioregistry_client`)
----------------------------------------------------------------------------

.. automodule:: indra.databases.bioregistry_client
    :members:

HGNC client (:py:mod:`indra.databases.hgnc_client`)
---------------------------------------------------

.. automodule:: indra.databases.hgnc_client
    :members:

UniProt client (:py:mod:`indra.databases.uniprot_client`)
---------------------------------------------------------

.. automodule:: indra.databases.uniprot_client
    :members:

See also https://protmapper.readthedocs.io/en/latest/modules/uniprot.html
whose functions this module imports and exposes.

ChEBI client (:py:mod:`indra.databases.chebi_client`)
-----------------------------------------------------

.. automodule:: indra.databases.chebi_client
    :members:

Cell type context client (:py:mod:`indra.databases.context_client`)
-------------------------------------------------------------------

.. automodule:: indra.databases.context_client
    :members:

NDEx client (:py:mod:`indra.databases.ndex_client`)
----------------------------------------------------

.. automodule:: indra.databases.ndex_client
    :members:

cBio portal client (:py:mod:`indra.databases.cbio_client`)
----------------------------------------------------------

.. automodule:: indra.databases.cbio_client
    :members:

ChEMBL client (:py:mod:`indra.databases.chembl_client`)
-------------------------------------------------------

.. automodule:: indra.databases.chembl_client
    :members:

LINCS client (:py:mod:`indra.databases.lincs_client`)
-----------------------------------------------------

.. automodule:: indra.databases.lincs_client
    :members:

MeSH client (:py:mod:`indra.databases.mesh_client`)
---------------------------------------------------

.. automodule:: indra.databases.mesh_client
    :members:

GO client (:py:mod:`indra.databases.go_client`)
-----------------------------------------------

.. automodule:: indra.databases.go_client
    :members:

PubChem client (:py:mod:`indra.databases.pubchem_client`)
---------------------------------------------------------

.. automodule:: indra.databases.pubchem_client
    :members:

miRBase client (:py:mod:`indra.databases.mirbase_client`)
---------------------------------------------------------
.. automodule:: indra.databases.mirbase_client
    :members:

Experimental Factor Ontology (EFO) client (:py:mod:`indra.databases.efo_client`)
--------------------------------------------------------------------------------
.. automodule:: indra.databases.efo_client
    :members:

Human Phenotype Ontology (HP) client (:py:mod:`indra.databases.hp_client`)
--------------------------------------------------------------------------
.. automodule:: indra.databases.hp_client
    :members:

Disease Ontology (DOID) client (:py:mod:`indra.databases.doid_client`)
----------------------------------------------------------------------
.. automodule:: indra.databases.doid_client
    :members:

Infectious Disease Ontology client (:py:mod:`indra.databases.ido_client`)
-------------------------------------------------------------------------
.. automodule:: indra.databases.ido_client
    :members:

Taxonomy client (:py:mod:`indra.databases.taxonomy_client`)
-----------------------------------------------------------
.. automodule:: indra.databases.taxonomy_client
    :members:

DrugBank client (:py:mod:`indra.databases.drugbank_client`)
-----------------------------------------------------------
.. automodule:: indra.databases.drugbank_client
    :members:

Enyzme Class client (:py:mod:`indra.databases.ec_client`)
---------------------------------------------------------
.. automodule:: indra.databases.ec_client
    :members:

OBO client (:py:mod:`indra.databases.obo_client`)
-------------------------------------------------
.. automodule:: indra.databases.obo_client
    :members:

OWL client (:py:mod:`indra.databases.owl_client`)
-------------------------------------------------
.. automodule:: indra.databases.owl_client
    :members:

Biolookup client (:py:mod:`indra.databases.biolookup_client`)
-------------------------------------------------------------
.. automodule:: indra.databases.biolookup_client
    :members:

MONDO client (:py:mod:`indra.databases.mondo_client`)
-----------------------------------------------------
.. automodule:: indra.databases.mondo_client
    :members:

MGI client (:py:mod:`indra.databases.mgi_client`)
-------------------------------------------------
.. automodule:: indra.databases.mgi_client
    :members:

RGD client (:py:mod:`indra.databases.rgd_client`)
-------------------------------------------------
.. automodule:: indra.databases.rgd_client
    :members: