INDRA
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  • License and funding
  • Installation
  • Getting started with INDRA
  • INDRA modules reference
  • Tutorials
    • Using natural language to build models
    • The Statement curation interface
    • Assembling everything known about a particular gene
  • REST API
INDRA
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  • Tutorials
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TutorialsΒΆ

  • Using natural language to build models
    • Read INDRA Statements from a natural language string
    • Assemble the INDRA Statements into a rule-based executable model
    • Exporting the model into other common formats
  • The Statement curation interface
    • Curating a Statement
    • Submitting a Curation
    • Curation Guidelines
      • Basic principles
      • Types of errors to curate
      • General notes on curation
  • Assembling everything known about a particular gene
    • Collect mechanisms from PathwayCommons and the BEL Large Corpus
    • Collect a list of publications that discuss the gene of interest
    • Get the abstracts corresponding to the publications
    • Read the content of the publications
    • Combine all statements and run pre-assembly
    • Assemble the statements into a network model
      • CX Network Model
      • IndraNet Model
      • Executable PySB Model
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© Copyright 2022, B. M. Gyori, J. A. Bachman Revision 87a4e28f.

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