Tutorials

• Using natural language to build models
  • Read INDRA Statements from a natural language string
  • Assemble the INDRA Statements into a rule-based executable model
  • Exporting the model into other common formats
• The Statement curation interface
  • Curating a Statement
  • Submitting a Curation
  • Curation Guidelines
    • Basic principles
    • Types of errors to curate
    • General notes on curation
• Assembling everything known about a particular gene
  • Collect mechanisms from PathwayCommons and the BEL Large Corpus
  • Collect a list of publications that discuss the gene of interest
  • Get the abstracts corresponding to the publications
  • Read the content of the publications
  • Combine all statements and run pre-assembly
  • Assemble the statements into a network model
    • CX Network Model
    • IndraNet Model
    • Executable PySB Model