Assemblers of model output (indra.assemblers)¶
- Executable PySB models (
indra.assemblers.pysb.assembler) - Cytoscape networks (
indra.assemblers.cx.assembler) - Natural language (
indra.assemblers.english.assembler) - Node-edge graphs (
indra.assemblers.graph.assembler) - SIF / Boolean networks (
indra.assemblers.sif.assembler) - MITRE “index cards” (
indra.assemblers.index_card.assembler) - SBGN output (
indra.assemblers.sbgn.assembler) - Cytoscape JS networks (
indra.assemblers.cyjs.assembler) - Causal analysis graphs (
indra.assemblers.cag.assembler) - Tabular output (
indra.assemblers.tsv.assembler) - HTML browsing and curation (
indra.assemblers.html.assembler) - BMI wrapper for PySB-assembled models (
indra.assemblers.pysb.bmi_wrapper) - PyBEL graphs (
indra.assemblers.pybel.assembler) - Kami models (
indra.assemblers.kami.assembler)