Assemblers of model output (indra.assemblers)

• Executable PySB models (indra.assemblers.pysb.assembler)
  • PySB Assembler (indra.assemblers.pysb.assembler)
  • PySB PreAssembler (indra.assemblers.pysb.preassembler)
  • Base Agents (indra.assemblers.pysb.base_agents)
  • A utility to get graphs from kappa (indra.assemblers.pysb.kappa_util)
• Cytoscape networks (indra.assemblers.cx.assembler)
• Natural language (indra.assemblers.english.assembler)
• Node-edge graphs (indra.assemblers.graph.assembler)
• SIF / Boolean networks (indra.assemblers.sif.assembler)
• MITRE “index cards” (indra.assemblers.index_card.assembler)
• SBGN output (indra.assemblers.sbgn.assembler)
• Cytoscape JS networks (indra.assemblers.cyjs.assembler)
• Causal analysis graphs (indra.assemblers.cag.assembler)
• Tabular output (indra.assemblers.tsv.assembler)
• HTML browsing and curation (indra.assemblers.html.assembler)
• BMI wrapper for PySB-assembled models (indra.assemblers.pysb.bmi_wrapper)
• PyBEL graphs (indra.assemblers.pybel.assembler)
• Kami models (indra.assemblers.kami.assembler)