Explanation (indra.explanation)

• Check whether a model satisfies a property (indra.explanation.model_checker)
  • Shared Model Checking Functionality (indra.explanation.model_checker.model_checker)
    • ModelChecker
    • NodesContainer
    • PathMetric
    • PathResult
    • prune_signed_nodes()
    • signed_edges_to_signed_nodes()
  • Checking PySB model (indra.explanation.model_checker.pysb)
    • PysbModelChecker
    • remove_im_params()
  • Checking Signed Graph (indra.explanation.model_checker.signed_graph)
    • SignedGraphModelChecker
  • Checking Unsigned Graph (indra.explanation.model_checker.unsigned_graph)
    • UnsignedGraphModelChecker
  • Checking PyBEL Graph (indra.explanation.model_checker.pybel)
    • PybelModelChecker
• Path finding algorithms for explanation (indra.explanation.pathfinding)
  • Path finding functions (indra.explanation.pathfinding.pathfinding)
    • bfs_search()
    • bfs_search_multiple_nodes()
    • find_sources()
    • get_path_iter()
    • open_dijkstra_search()
    • shortest_simple_paths()
  • Path finding utilities (indra.explanation.pathfinding.util)
    • get_sorted_neighbors()
    • get_subgraph()
    • path_sign_to_signed_nodes()
    • signed_nodes_to_signed_edge()
• Reporting explanations (indra.explanation.reporting)
  • PybelEdge
    • PybelEdge.relation
    • PybelEdge.reverse
    • PybelEdge.source
    • PybelEdge.target
  • RefEdge
  • stmt_from_rule()
  • stmts_from_indranet_path()
  • stmts_from_pybel_path()
  • stmts_from_pysb_path()