INDRA
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  • License and funding
  • Installation
  • Getting started with INDRA
  • INDRA modules reference
    • INDRA Statements (indra.statements)
    • Processors for knowledge input (indra.sources)
    • Database clients (indra.databases)
    • Literature clients (indra.literature)
    • INDRA Ontologies (indra.ontology)
    • Preassembly (indra.preassembler)
    • Belief prediction (indra.belief)
    • Mechanism Linker (indra.mechlinker)
    • Assemblers of model output (indra.assemblers)
    • Explanation (indra.explanation)
      • Check whether a model satisfies a property (indra.explanation.model_checker)
      • Path finding algorithms for explanation (indra.explanation.pathfinding)
      • Reporting explanations (indra.explanation.reporting)
    • Assembly Pipeline (indra.pipeline)
    • Tools (indra.tools)
    • Resource files
    • Util (indra.util)
  • Tutorials
  • REST API
INDRA
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  • INDRA modules reference »
  • Explanation (indra.explanation)
  • Edit on GitHub

Explanation (indra.explanation)ΒΆ

  • Check whether a model satisfies a property (indra.explanation.model_checker)
    • Shared Model Checking Functionality (indra.explanation.model_checker.model_checker)
      • ModelChecker
      • NodesContainer
      • PathMetric
      • PathResult
      • prune_signed_nodes()
      • signed_edges_to_signed_nodes()
    • Checking PySB model (indra.explanation.model_checker.pysb)
      • PysbModelChecker
      • remove_im_params()
    • Checking Signed Graph (indra.explanation.model_checker.signed_graph)
      • SignedGraphModelChecker
    • Checking Unsigned Graph (indra.explanation.model_checker.unsigned_graph)
      • UnsignedGraphModelChecker
    • Checking PyBEL Graph (indra.explanation.model_checker.pybel)
      • PybelModelChecker
  • Path finding algorithms for explanation (indra.explanation.pathfinding)
    • Path finding functions (indra.explanation.pathfinding.pathfinding)
      • bfs_search()
      • bfs_search_multiple_nodes()
      • find_sources()
      • get_path_iter()
      • open_dijkstra_search()
      • shortest_simple_paths()
    • Path finding utilities (indra.explanation.pathfinding.util)
      • get_sorted_neighbors()
      • get_subgraph()
      • path_sign_to_signed_nodes()
      • signed_nodes_to_signed_edge()
  • Reporting explanations (indra.explanation.reporting)
    • PybelEdge
      • PybelEdge.relation
      • PybelEdge.reverse
      • PybelEdge.source
      • PybelEdge.target
    • RefEdge
    • stmt_from_rule()
    • stmts_from_indranet_path()
    • stmts_from_pybel_path()
    • stmts_from_pysb_path()
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© Copyright 2022, B. M. Gyori, J. A. Bachman Revision b358526e.

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