INDRA Ontologies (indra.ontology)

• IndraOntology (indra.ontology)
  • IndraOntology
    • IndraOntology.name
    • IndraOntology.version
    • IndraOntology.get_children()
    • IndraOntology.get_id()
    • IndraOntology.get_id_from_name()
    • IndraOntology.get_mappings()
    • IndraOntology.get_name()
    • IndraOntology.get_node_property()
    • IndraOntology.get_ns()
    • IndraOntology.get_ns_id()
    • IndraOntology.get_parents()
    • IndraOntology.get_polarity()
    • IndraOntology.get_replacement()
    • IndraOntology.get_top_level_parents()
    • IndraOntology.get_type()
    • IndraOntology.initialize()
    • IndraOntology.is_opposite()
    • IndraOntology.isa()
    • IndraOntology.isa_or_partof()
    • IndraOntology.isrel()
    • IndraOntology.label()
    • IndraOntology.map_to()
    • IndraOntology.maps_to()
    • IndraOntology.name
    • IndraOntology.nodes_from_suffix()
    • IndraOntology.partof()
    • IndraOntology.reverse_label()
• Grounding and name standardization (indra.ontology.standardize)
  • get_standard_agent()
  • get_standard_name()
  • standardize_agent_name()
  • standardize_db_refs()
  • standardize_name_db_refs()
• INDRA BioOntology (indra.ontology.bio_ontology)
  • BioOntology
    • BioOntology.add_edges_from()
    • BioOntology.add_nodes_from()
    • BioOntology.initialize()
  • BioOntology
    • BioOntology.add_edges_from()
    • BioOntology.add_nodes_from()
    • BioOntology.initialize()
  • Generating and caching the BioOntology
• Virtual Ontology (indra.ontology.virtual_ontology)
  • VirtualOntology
    • VirtualOntology.get_id_from_name()
    • VirtualOntology.get_node_property()
    • VirtualOntology.initialize()
• Ontology web service (indra.ontology.app)