INDRA
latest
  • License and funding
  • Installation
  • Getting started with INDRA
  • INDRA modules reference
    • INDRA Statements (indra.statements)
    • Processors for knowledge input (indra.sources)
    • Database clients (indra.databases)
    • Literature clients (indra.literature)
    • INDRA Ontologies (indra.ontology)
      • IndraOntology (indra.ontology)
      • Grounding and name standardization (indra.ontology.standardize)
      • INDRA BioOntology (indra.ontology.bio_ontology)
      • Virtual Ontology (indra.ontology.virtual_ontology)
      • Ontology web service (indra.ontology.app)
    • Preassembly (indra.preassembler)
    • Belief prediction (indra.belief)
    • Mechanism Linker (indra.mechlinker)
    • Assemblers of model output (indra.assemblers)
    • Explanation (indra.explanation)
    • Assembly Pipeline (indra.pipeline)
    • Tools (indra.tools)
    • Resource files
    • Util (indra.util)
  • Tutorials
  • REST API
INDRA
  • Docs »
  • INDRA modules reference »
  • INDRA Ontologies (indra.ontology)
  • Edit on GitHub

INDRA Ontologies (indra.ontology)ΒΆ

  • IndraOntology (indra.ontology)
    • IndraOntology
      • IndraOntology.name
      • IndraOntology.version
      • IndraOntology.get_children()
      • IndraOntology.get_id()
      • IndraOntology.get_id_from_name()
      • IndraOntology.get_mappings()
      • IndraOntology.get_name()
      • IndraOntology.get_node_property()
      • IndraOntology.get_ns()
      • IndraOntology.get_ns_id()
      • IndraOntology.get_parents()
      • IndraOntology.get_polarity()
      • IndraOntology.get_replacement()
      • IndraOntology.get_top_level_parents()
      • IndraOntology.get_type()
      • IndraOntology.initialize()
      • IndraOntology.is_opposite()
      • IndraOntology.isa()
      • IndraOntology.isa_or_partof()
      • IndraOntology.isrel()
      • IndraOntology.label()
      • IndraOntology.map_to()
      • IndraOntology.maps_to()
      • IndraOntology.name
      • IndraOntology.nodes_from_suffix()
      • IndraOntology.partof()
      • IndraOntology.reverse_label()
  • Grounding and name standardization (indra.ontology.standardize)
    • get_standard_agent()
    • get_standard_name()
    • standardize_agent_name()
    • standardize_db_refs()
    • standardize_name_db_refs()
  • INDRA BioOntology (indra.ontology.bio_ontology)
    • BioOntology
      • BioOntology.add_edges_from()
      • BioOntology.add_nodes_from()
      • BioOntology.initialize()
    • BioOntology
      • BioOntology.add_edges_from()
      • BioOntology.add_nodes_from()
      • BioOntology.initialize()
    • Generating and caching the BioOntology
  • Virtual Ontology (indra.ontology.virtual_ontology)
    • VirtualOntology
      • VirtualOntology.get_id_from_name()
      • VirtualOntology.get_node_property()
      • VirtualOntology.initialize()
  • Ontology web service (indra.ontology.app)
Next Previous

© Copyright 2022, B. M. Gyori, J. A. Bachman Revision 87a4e28f.

Built with Sphinx using a theme provided by Read the Docs.
Read the Docs v: latest
Versions
latest
stable
wm-docs
test-doc-build
docstrings
Downloads
pdf
html
On Read the Docs
Project Home
Builds

Free document hosting provided by Read the Docs.