RLIMS-P is a rule-based reading system which extracts phosphorylation relationships with sites from text. RLIMS-P exposes a web service to submit PubMed IDs and PMC IDs for processing.
RLIMS-P API (
process_from_webservice(id_val, id_type='pmcid', source='pmc', with_grounding=True)¶
Return an output from RLIMS-p for the given PubMed ID or PMC ID.
- id_val (str) – A PMCID, with the prefix PMC, or pmid, with no prefix, of the paper to be “read”.
- id_type (str) – Either ‘pmid’ or ‘pmcid’. The default is ‘pmcid’.
- source (str) – Either ‘pmc’ or ‘medline’, whether you want pmc fulltext or medline abstracts.
- with_grounding (bool) – The RLIMS-P web service provides two endpoints, one pre-grounded, the other not so much. The grounded endpoint returns far less content, and may perform some grounding that can be handled by the grounding mapper.
An RlimspProcessor which contains a list of extracted INDRA Statements in its statements attribute.
RLIMSP-P Processor (
An object that represents a single RLIMS-P Paragraph.