All modules for which code is available
- indra.assemblers.cx.assembler
- indra.assemblers.cyjs.assembler
- indra.assemblers.english.assembler
- indra.assemblers.graph.assembler
- indra.assemblers.html.assembler
- indra.assemblers.index_card.assembler
- indra.assemblers.indranet.assembler
- indra.assemblers.indranet.net
- indra.assemblers.kami.assembler
- indra.assemblers.pybel.assembler
- indra.assemblers.pysb.assembler
- indra.assemblers.pysb.base_agents
- indra.assemblers.pysb.bmi_wrapper
- indra.assemblers.pysb.kappa_util
- indra.assemblers.pysb.preassembler
- indra.assemblers.sbgn.assembler
- indra.assemblers.sif.assembler
- indra.assemblers.tsv.assembler
- indra.belief
- indra.databases.biolookup_client
- indra.databases.cbio_client
- indra.databases.chebi_client
- indra.databases.chembl_client
- indra.databases.context_client
- indra.databases.doid_client
- indra.databases.drugbank_client
- indra.databases.efo_client
- indra.databases.go_client
- indra.databases.hgnc_client
- indra.databases.hp_client
- indra.databases.identifiers
- indra.databases.ido_client
- indra.databases.lincs_client
- indra.databases.mesh_client
- indra.databases.mirbase_client
- indra.databases.ndex_client
- indra.databases.obo_client
- indra.databases.owl_client
- indra.databases.pubchem_client
- indra.databases.taxonomy_client
- indra.explanation.model_checker.model_checker
- indra.explanation.model_checker.pybel
- indra.explanation.model_checker.pysb
- indra.explanation.model_checker.signed_graph
- indra.explanation.model_checker.unsigned_graph
- indra.explanation.pathfinding.pathfinding
- indra.explanation.pathfinding.util
- indra.explanation.reporting
- indra.literature
- indra.literature.adeft_tools
- indra.literature.biorxiv_client
- indra.literature.coci_client
- indra.literature.crossref_client
- indra.literature.elsevier_client
- indra.literature.newsapi_client
- indra.literature.pmc_client
- indra.literature.pubmed_client
- indra.mechlinker
- indra.ontology.bio.ontology
- indra.ontology.ontology_graph
- indra.ontology.standardize
- indra.ontology.virtual.ontology
- indra.pipeline.decorators
- indra.pipeline.pipeline
- indra.preassembler
- indra.preassembler.custom_preassembly
- indra.preassembler.grounding_mapper.analysis
- indra.preassembler.grounding_mapper.disambiguate
- indra.preassembler.grounding_mapper.gilda
- indra.preassembler.grounding_mapper.mapper
- indra.preassembler.refinement
- indra.preassembler.sitemapper
- indra.resources
- indra.sources.acsn.api
- indra.sources.acsn.processor
- indra.sources.bel.api
- indra.sources.bel.processor
- indra.sources.biofactoid.api
- indra.sources.biofactoid.processor
- indra.sources.biogrid
- indra.sources.biopax.api
- indra.sources.biopax.processor
- indra.sources.creeds.api
- indra.sources.creeds.processor
- indra.sources.crog.api
- indra.sources.crog.processor
- indra.sources.ctd.api
- indra.sources.ctd.processor
- indra.sources.dgi.api
- indra.sources.dgi.processor
- indra.sources.drugbank.api
- indra.sources.drugbank.processor
- indra.sources.eidos.api
- indra.sources.eidos.bio_processor
- indra.sources.eidos.cli
- indra.sources.eidos.client
- indra.sources.eidos.processor
- indra.sources.eidos.reader
- indra.sources.geneways.api
- indra.sources.geneways.processor
- indra.sources.gnbr.api
- indra.sources.gnbr.processor
- indra.sources.hprd.api
- indra.sources.hprd.processor
- indra.sources.hypothesis.api
- indra.sources.hypothesis.processor
- indra.sources.indra_db_rest.api
- indra.sources.indra_db_rest.processor
- indra.sources.indra_db_rest.query
- indra.sources.isi.api
- indra.sources.isi.processor
- indra.sources.medscan.api
- indra.sources.medscan.processor
- indra.sources.minerva.api
- indra.sources.minerva.processor
- indra.sources.ndex_cx.api
- indra.sources.ndex_cx.processor
- indra.sources.omnipath.api
- indra.sources.omnipath.processor
- indra.sources.phosphoelm.api
- indra.sources.phosphoelm.processor
- indra.sources.reach.api
- indra.sources.reach.processor
- indra.sources.reach.reader
- indra.sources.rlimsp.api
- indra.sources.rlimsp.processor
- indra.sources.signor.api
- indra.sources.signor.processor
- indra.sources.sparser.api
- indra.sources.tas.api
- indra.sources.tas.processor
- indra.sources.tees.api
- indra.sources.tees.processor
- indra.sources.trips.api
- indra.sources.trips.client
- indra.sources.trips.drum_reader
- indra.sources.trips.processor
- indra.sources.trrust.api
- indra.sources.trrust.processor
- indra.sources.ubibrowser.api
- indra.sources.ubibrowser.processor
- indra.sources.utils
- indra.sources.virhostnet.api
- indra.sources.virhostnet.processor
- indra.statements.agent
- indra.statements.concept
- indra.statements.context
- indra.statements.delta
- indra.statements.evidence
- indra.statements.io
- indra.statements.resources
- indra.statements.statements
- indra.statements.util
- indra.statements.validate
- indra.tools.assemble_corpus
- indra.tools.executable_subnetwork
- indra.tools.fix_invalidities
- indra.tools.gene_network
- indra.tools.hypothesis_annotator
- indra.tools.incremental_model
- indra.tools.machine.config
- indra.util.aws
- indra.util.get_version
- indra.util.nested_dict
- indra.util.plot_formatting
- indra.util.statement_presentation