BioGrid (indra.sources.biogrid)

class indra.sources.biogrid.BiogridProcessor(biogrid_file=None, physical_only=True)[source]

Extracts INDRA Complex statements from Biogrid interaction data.

Parameters:
  • biogrid_file (str) – The file containing the Biogrid data in .tab2 format. If not provided, the BioGrid data is downloaded from the BioGrid website.
  • physical_only (boolean) – If True, only physical interactions are included (e.g., genetic interactions are excluded). If False, all interactions are included).
statements

list[indra.statements.Statements] – Extracted INDRA Complex statements.

physical_only

boolean – Indicates whether only physical interactions were included during statement processing.