SIGNOR API (
Process Signor interaction data from CSV files.
- signor_data_file (str) – Path to the Signor interaction data file in CSV format.
- signor_complexes_file (str) – Path to the Signor complexes data in CSV format. If unspecified, Signor complexes will not be expanded to their constitutents.
SignorProcessor containing Statements extracted from the Signor data.
SIGNOR Processor (
An input processor for the SIGNOR database: a database of causal relationships between biological entities.
Perfetto et al., “SIGNOR: a database of causal relationships between biological entities,” Nucleic Acids Research, Volume 44, Issue D1, 4 January 2016, Pages D548-D554. https://doi.org/10.1093/nar/gkv1048
Processor for Signor dataset, available at http://signor.uniroma2.it.
- data (iterator) – Iterator over rows of a SIGNOR CSV file.
- complex_map (dict) – A dict containing SIGNOR complexes, keyed by their IDs.
A list of INDRA Statements extracted from the SIGNOR table.
List of rows where no mechanism statements were generated.
Type: list of SignorRow namedtuples
Counter listing the frequency of different MECHANISM types in the list of no-mechanism rows.