Phospho.ELM (indra.sources.phosphoelm
)
This module provides an interface to the Phospho.ELM database and extracts phosphorylation relationships as INDRA Statements. Phospho.ELM is available at http://phospho.elm.eu.org/, see also https://academic.oup.com/nar/article/39/suppl_1/D261/2506728
Phospho.ELM API (indra.sources.phosphoelm.api
)
- indra.sources.phosphoelm.api.process_from_dump(fname, delimiter='\t')[source]
Process a Phospho.ELM file dump
The dump can be obtained at http://phospho.elm.eu.org/dataset.html.
Phospho.ELM Processor (indra.sources.phosphoelm.processor
)
- class indra.sources.phosphoelm.processor.PhosphoElmProcessor(phosphoelm_data)[source]
Processes data dumps from the phospho.ELM database.
See http://phospho.elm.eu.org/dataset.html
- Parameters
phosphoelm_data (list[dict]) – JSON compatible list of entries from a phospho.ELM data dump